If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ), 'gf_id' => 'HOM05D000826', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000826' ), 'data_identifier' => 'HOM05D000826', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000826', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '720', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00550' => 'bna', 'A02p23340' => 'bna', 'A02p23380' => 'bna', 'A02p24310' => 'bna', 'A03p21260' => 'bna', 'A03p36340' => 'bna', 'A04p29390' => 'bna', 'A05p07670' => 'bna', 'A06p46110' => 'bna', 'A07p45100' => 'bna', 'A08p23460' => 'bna', 'A09p22160' => 'bna', 'Aa31LG4G870' => 'aar', 'Aa31LG5G18830' => 'aar', 'Aa31LG5G24130' => 'aar', 'Aa31LG6G15620' => 'aar', 'Aa31LG9G6730' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2020' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3675' => 'aag', 'Actinidia05374' => 'ach', 'Actinidia11533' => 'ach', 'Actinidia18227' => 'ach', 'Actinidia25439' => 'ach', 'Actinidia25440' => 'ach', 'Actinidia28472' => 'ach', 'Actinidia29052' => 'ach', 'Actinidia32556' => 'ach', 'Actinidia39586' => 'ach', 'Ah.02g129120' => 'amhyb', 'Ah.08g209800' => 'amhyb', 'Ah.09g232510' => 'amhyb', 'Ah.10g030960' => 'amhyb', 'Ah.15g090260' => 'amhyb', 'AL2G40850' => 'aly', 'AL3G19850' => 'aly', 'AL4G35620' => 'aly', 'AL7G11810' => 'aly', 'AL7G39290' => 'aly', 'AL8G12290' => 'aly', 'Aqoxy144s011' => 'aox', 'Aqoxy1G01679' => 'aox', 'Aqoxy1G01976' => 'aox', 'Aqoxy1G02396' => 'aox', 'Aqoxy4G02157' => 'aox', 'Aqoxy5G01981' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XA03X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X15P1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4DUV6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61ILA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7661JY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATM76I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZ80GT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV66IC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3DNME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW110K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J633C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L615XT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N53ICK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PGH95A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNR9EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYK0BG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T26UD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8TVPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V6RYFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7CJIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6DGE6' => 'arhy', 'AT1G80600' => 'ath', 'AT2G38400' => 'ath', 'AT3G08860' => 'ath', 'AT4G39660' => 'ath', 'AT5G46180' => 'ath', 'ATR0564G003' => 'atr', 'ATR0681G046' => 'atr', 'ATR0763G207' => 'atr', 'ATR1098G046' => 'atr', 'Atru.chr10.1167' => 'acertr', 'Atru.chr2.3460' => 'acertr', 'Atru.chr4.313' => 'acertr', 'Atru.chr8.2365' => 'acertr', 'AUR62002697' => 'cqu', 'AUR62006331' => 'cqu', 'AUR62011453' => 'cqu', 'AUR62016604' => 'cqu', 'AUR62026369' => 'cqu', 'AUR62030155' => 'cqu', 'AUR62030183' => 'cqu', 'AUR62030712' => 'cqu', 'AUR62036359' => 'cqu', 'AUR62043490' => 'cqu', 'BcaB01g00836' => 'bca', 'BcaB01g03689' => 'bca', 'BcaB02g09192' => 'bca', 'BcaB02g10883' => 'bca', 'BcaB03g12270' => 'bca', 'BcaB04g18569' => 'bca', 'BcaB05g25242' => 'bca', 'BcaB05g25245' => 'bca', 'BcaB05g25251' => 'bca', 'BcaB07g30849' => 'bca', 'BcaC01g00306' => 'bca', 'BcaC01g00307' => 'bca', 'BcaC01g04200' => 'bca', 'BcaC01g05541' => 'bca', 'BcaC01g05542' => 'bca', 'BcaC02g07467' => 'bca', 'BcaC02g11986' => 'bca', 'BcaC03g15945' => 'bca', 'BcaC03g15948' => 'bca', 'BcaC04g21718' => 'bca', 'BcaC04g21719' => 'bca', 'BcaC06g31492' => 'bca', 'BcaC06g31494' => 'bca', 'BcaC09g48530' => 'bca', 'BcaNung00886' => 'bca', 'BcaNung06053' => 'bca', 'BcaNung06054' => 'bca', 'BolC1t00071H' => 'bol', 'BolC2t09722H' => 'bol', 'BolC3t14906H' => 'bol', 'BolC3t14912H' => 'bol', 'BolC3t16665H' => 'bol', 'BolC3t20069H' => 'bol', 'BolC3t20070H' => 'bol', 'BolC4t22527H' => 'bol', 'BolC4t23543H' => 'bol', 'BolC4t28171H' => 'bol', 'BolC6t40407H' => 'bol', 'BolC7t43479H' => 'bol', 'BolC9t55707H' => 'bol', 'BraA01t00062Z' => 'bra', 'BraA02t07328Z' => 'bra', 'BraA02t07331Z' => 'bra', 'BraA02t07421Z' => 'bra', 'BraA03t11363Z' => 'bra', 'BraA03t12803Z' => 'bra', 'BraA04t18407Z' => 'bra', 'BraA05t19734Z' => 'bra', 'BraA06t27476Z' => 'bra', 'BraA07t32013Z' => 'bra', 'BraA08t34303Z' => 'bra', 'BraA09t37821Z' => 'bra', 'C01p00680' => 'bna', 'C02p37070' => 'bna', 'C03p25140' => 'bna', 'C03p43960' => 'bna', 'C03p78100' => 'bna', 'C04p09180' => 'bna', 'C04p20050' => 'bna', 'C04p66690' => 'bna', 'C06p53930' => 'bna', 'C07p29380' => 'bna', 'C09p28320' => 'bna', 'CAN.G18.22' => 'can', 'CAN.G42.14' => 'can', 'CAN.G528.1' => 'can', 'CAN.G981.30' => 'can', 'CANSAT35G1179' => 'cansat', 'CANSAT35G1538' => 'cansat', 'CANSAT64G0794' => 'cansat', 'CANSAT80G1007' => 'cansat', 'CARHR073920' => 'chi', 'CARHR083180' => 'chi', 'CARHR133020' => 'chi', 'CARHR175610' => 'chi', 'CARHR247070' => 'chi', 'Carub.0002s2695' => 'cru', 'Carub.0003s0797' => 'cru', 'Carub.0004s2036' => 'cru', 'Carub.0007s0153' => 'cru', 'Carub.0008s0174' => 'cru', 'Ca_07418_v3' => 'car', 'Ca_07741_v3' => 'car', 'Ca_15022_v3' => 'car', 'Ca_17704_v3' => 'car', 'Ca_18168_v3' => 'car', 'Ca_29265_v3' => 'car', 'Ca_29519_v3' => 'car', 'CBR_g34489' => 'cbr', 'CBR_g37699' => 'cbr', 'Cc00_g12600' => 'ccan', 'Cc01_g15030' => 'ccan', 'Cc04_g04810' => 'ccan', 'Cc07_g15820' => 'ccan', 'Cc07_g15830' => 'ccan', 'Cc11_g02080' => 'ccan', 'Cc11_g02220' => 'ccan', 'CDE01G0123' => 'cde', 'CDE02G0508' => 'cde', 'CDE04G1774' => 'cde', 'CDE08G1415' => 'cde', 'CDE12G0391' => 'cde', 'CDE12G0961' => 'cde', 'Cfa000923' => 'cfa', 'Cfa001913' => 'cfa', 'Cfa002730' => 'cfa', 'Cfa011796' => 'cfa', 'Cfa017071' => 'cfa', 'Cfa019411' => 'cfa', 'Cfa023210' => 'cfa', 'Cfa023439' => 'cfa', 'Cfa023762' => 'cfa', 'Cfa025041' => 'cfa', 'Cfa027217' => 'cfa', 'Ciclev10005019m.g' => 'ccl', 'Ciclev10011621m.g' => 'ccl', 'Ciclev10015647m.g' => 'ccl', 'Ciclev10025514m.g' => 'ccl', 'CiPaw.01G112600' => 'cil', 'CiPaw.01G251800' => 'cil', 'CiPaw.02G160300' => 'cil', 'CiPaw.02G160400' => 'cil', 'CiPaw.03G136700' => 'cil', 'CiPaw.09G121700' => 'cil', 'CiPaw.09G217400' => 'cil', 'CiPaw.10G090200' => 'cil', 'CiPaw.10G163300' => 'cil', 'CiPaw.13G067100' => 'cil', 'ClCG03G006680' => 'cla', 'ClCG03G006690' => 'cla', 'ClCG04G006540' => 'cla', 'ClCG07G009310' => 'cla', 'ClCG09G003180' => 'cla', 'ClCG10G022590' => 'cla', 'COL.COLO4_11832' => 'col', 'COL.COLO4_31038' => 'col', 'COL.COLO4_36105' => 'col', 'Cpa.g.c38612' => 'cpa', 'Cpa.g.c44118' => 'cpa', 'Cpa.g.sc100.2' => 'cpa', 'Cpa.g.sc17.2' => 'cpa', 'Cpa.g.sc33.99' => 'cpa', 'Cpa.g.sc331.1' => 'cpa', 'Cre03.g182800' => 'cre', 'Cre06.g278163' => 'cre', 'Cre09.g413750' => 'cre', 'Cre11.g474800' => 'cre', 'Cre16.g650650' => 'cre', 'CsaV3_1G004640' => 'csa', 'CsaV3_3G033240' => 'csa', 'CsaV3_4G004900' => 'csa', 'CsaV3_4G026970' => 'csa', 'CsaV3_7G032040' => 'csa', 'CsaV3_UNG183400' => 'csa', 'CSS0000946' => 'camsi', 'CSS0007040' => 'camsi', 'CSS0009690' => 'camsi', 'CSS0017067' => 'camsi', 'CSS0019014' => 'camsi', 'CSS0020600' => 'camsi', 'CSS0028491' => 'camsi', 'CSS0030893' => 'camsi', 'CSS0034369' => 'camsi', 'CSS0040557' => 'camsi', 'CSS0044711' => 'camsi', 'CSS0050037' => 'camsi', 'DCAR_007881' => 'dca', 'DCAR_014252' => 'dca', 'DCAR_016283' => 'dca', 'DCAR_023985' => 'dca', 'DCAR_029786' => 'dca', 'Dinv00282' => 'din', 'Dinv01611' => 'din', 'Dinv03447' => 'din', 'Dinv12250' => 'din', 'Dinv21557' => 'din', 'Dinv21968' => 'din', 'Dinv23314' => 'din', 'Dinv25296' => 'din', 'Dinv32232' => 'din', 'Dinv35444' => 'din', 'Dinv38159' => 'din', 'Duzib147G1414' => 'dzi', 'Duzib151G0528' => 'dzi', 'Duzib151G0898' => 'dzi', 'Duzib160G0889' => 'dzi', 'Duzib160G0893' => 'dzi', 'Duzib212G0427' => 'dzi', 'Duzib235G1199' => 'dzi', 'ECA234G1332' => 'eca', 'ECA236G1175' => 'eca', 'ECA236G2471' => 'eca', 'ECA238G1594' => 'eca', 'ECA246G1772' => 'eca', 'ECA246G4731' => 'eca', 'ECA247G1039' => 'eca', 'EL10Ac4g09536' => 'bvu', 'EL10Ac4g09813' => 'bvu', 'EL10Ac7g17041' => 'bvu', 'EL10Ac8g19645' => 'bvu', 'EL10Ac9g21850' => 'bvu', 'EL10As2g23270' => 'bvu', 'EL10As5g23570' => 'bvu', 'Eucgr.D00287' => 'egr', 'Eucgr.F04303' => 'egr', 'Eucgr.F04428' => 'egr', 'Eucgr.H04825' => 'egr', 'Eucgr.K01268' => 'egr', 'FAN02G0453' => 'fan', 'FAN05G2213' => 'fan', 'FAN05G5680' => 'fan', 'FAN09G3028' => 'fan', 'FAN11G0980' => 'fan', 'FAN11G2713' => 'fan', 'FAN14G0116' => 'fan', 'FAN14G1620' => 'fan', 'FAN16G1939' => 'fan', 'FAN16G2689' => 'fan', 'FAN16G3098' => 'fan', 'FAN19G2340' => 'fan', 'FAN21G1090' => 'fan', 'FAN21G2333' => 'fan', 'FAN23G2252' => 'fan', 'FAN25G3720' => 'fan', 'FAN26G1056' => 'fan', 'FAN28G1605' => 'fan', 'FvH4_1g21920' => 'fve', 'FvH4_3g05240' => 'fve', 'FvH4_3g15500' => 'fve', 'FvH4_6g10440' => 'fve', 'FvH4_6g29020' => 'fve', 'Glyma.01G129400' => 'gma', 'Glyma.02G189300' => 'gma', 'Glyma.03G040600' => 'gma', 'Glyma.05G141900' => 'gma', 'Glyma.05G182600' => 'gma', 'Glyma.07G118300' => 'gma', 'Glyma.08G097800' => 'gma', 'Glyma.08G140200' => 'gma', 'Glyma.09G278300' => 'gma', 'Glyma.10G255400' => 'gma', 'Glyma.11G236200' => 'gma', 'Glyma.16G102551' => 'gma', 'Glyma.18G021001' => 'gma', 'Glyma.18G210500' => 'gma', 'Glyma.19G189900' => 'gma', 'Gohir.A02G005300' => 'ghi', 'Gohir.A06G138700' => 'ghi', 'Gohir.A09G091300' => 'ghi', 'Gohir.A09G213628' => 'ghi', 'Gohir.A10G086400' => 'ghi', 'Gohir.A10G148200' => 'ghi', 'Gohir.D02G005800' => 'ghi', 'Gohir.D06G143500' => 'ghi', 'Gohir.D09G091300' => 'ghi', 'Gohir.D09G091400' => 'ghi', 'Gohir.D09G213400' => 'ghi', 'Gohir.D10G102300' => 'ghi', 'Gohir.D10G118400' => 'ghi', 'Gorai.005G006500' => 'gra', 'Gorai.006G107600' => 'gra', 'Gorai.006G233600' => 'gra', 'Gorai.010G167200' => 'gra', 'Gorai.011G112000' => 'gra', 'Gorai.011G130200' => 'gra', 'Gorai.N027900' => 'gra', 'GSVIVG01017522001' => 'vvi', 'GSVIVG01020266001' => 'vvi', 'GSVIVG01020269001' => 'vvi', 'GSVIVG01021525001' => 'vvi', 'GSVIVG01022201001' => 'vvi', 'GSVIVG01024609001' => 'vvi', 'GSVIVG01030227001' => 'vvi', 'HanXRQChr03g0065151' => 'han', 'HanXRQChr03g0090071' => 'han', 'HanXRQChr10g0288561' => 'han', 'HanXRQChr14g0446231' => 'han', 'HanXRQChr15g0468781' => 'han', 'HanXRQChr15g0471951' => 'han', 'HanXRQChr16g0510841' => 'han', 'Haze_05627' => 'cav', 'Haze_07840' => 'cav', 'Haze_21125' => 'cav', 'Haze_24434' => 'cav', 'Haze_26287' => 'cav', 'Haze_26696' => 'cav', 'Haze_26855' => 'cav', 'Haze_27692' => 'cav', 'Hma1.2p1_0020F.1_g014180' => 'hma', 'Hma1.2p1_0020F.1_g014190' => 'hma', 'Hma1.2p1_0109F.1_g052260' => 'hma', 'Hma1.2p1_0282F.1_g113400' => 'hma', 'Hma1.2p1_0282F.1_g113410' => 'hma', 'Hma1.2p1_1421F.1_g282470' => 'hma', 'HPP92_006008' => 'vpl', 'HPP92_006009' => 'vpl', 'HPP92_006027' => 'vpl', 'HPP92_015163' => 'vpl', 'HPP92_017923' => 'vpl', 'HPP92_025119' => 'vpl', 'Hund01640' => 'sun', 'Hund02263' => 'sun', 'Hund19806' => 'sun', 'Hund21539' => 'sun', 'Lalb_Chr01g0023621' => 'lal', 'Lalb_Chr03g0040931' => 'lal', 'Lalb_Chr07g0190801' => 'lal', 'Lalb_Chr08g0231291' => 'lal', 'Lalb_Chr18g0051491' => 'lal', 'Lalb_Chr18g0051501' => 'lal', 'Lalb_Chr18g0054071' => 'lal', 'Lj1A124G29' => 'lonja', 'Lj1g0006530' => 'lja', 'Lj1g0012152' => 'lja', 'Lj2A320T45' => 'lonja', 'Lj2C63T4' => 'lonja', 'Lj2g0003775' => 'lja', 'Lj3g0004181' => 'lja', 'Lj4A879G62' => 'lonja', 'Lj4g0009768' => 'lja', 'Lj4g0011938' => 'lja', 'Lj4g0015055' => 'lja', 'Lj5A77T55' => 'lonja', 'Lj6A64T35' => 'lonja', 'Lj6g0006872' => 'lja', 'Lsat_1_v5_gn_2_124040' => 'lsa', 'Lsat_1_v5_gn_2_67580' => 'lsa', 'Lsat_1_v5_gn_3_117901' => 'lsa', 'Lsat_1_v5_gn_4_29681' => 'lsa', 'Lsat_1_v5_gn_5_5481' => 'lsa', 'Lsat_1_v5_gn_5_6080' => 'lsa', 'Lsat_1_v5_gn_5_7861' => 'lsa', 'Lsat_1_v5_gn_8_108681' => 'lsa', 'Lsat_1_v5_gn_8_118500' => 'lsa', 'Manes.06G174300' => 'mes', 'Manes.08G172900' => 'mes', 'Manes.09G114900' => 'mes', 'Manes.11G063000' => 'mes', 'Manes.13G089400' => 'mes', 'Manes.15G123600' => 'mes', 'Manes.17G072300' => 'mes', 'Mapoly0003s0017' => 'mpo', 'Mapoly0013s0064' => 'mpo', 'Mapoly0025s0002' => 'mpo', 'MBI02_g03072_MAGBIO' => 'mbi', 'MBI02_g13007_MAGBIO' => 'mbi', 'MBI15_g10513_MAGBIO' => 'mbi', 'MCO12G245' => 'mco', 'MCO15G206' => 'mco', 'MD01G1021300' => 'mdo', 'MD01G1021400' => 'mdo', 'MD01G1021500' => 'mdo', 'MD04G1170100' => 'mdo', 'MD05G1222800' => 'mdo', 'MD05G1223000' => 'mdo', 'MD05G1281300' => 'mdo', 'MD06G1008100' => 'mdo', 'MD10G1204400' => 'mdo', 'MD10G1260100' => 'mdo', 'MD12G1184100' => 'mdo', 'MD15G1330500' => 'mdo', 'MD17G1219100' => 'mdo', 'Medtr3g089960' => 'mtr', 'Medtr3g465800' => 'mtr', 'Medtr3g465840' => 'mtr', 'Medtr4g045917' => 'mtr', 'Medtr7g012080' => 'mtr', 'Medtr7g012085' => 'mtr', 'Medtr7g031840' => 'mtr', 'Medtr7g046350' => 'mtr', 'Medtr7g046360' => 'mtr', 'Medtr7g072420' => 'mtr', 'Medtr7g451450' => 'mtr', 'Medtr8g007510' => 'mtr', 'Medtr8g091660' => 'mtr', 'MELO3C002752.2' => 'cme', 'MELO3C009117.2' => 'cme', 'MELO3C017571.2' => 'cme', 'MELO3C023453.2' => 'cme', 'MELO3C026045.2' => 'cme', 'Migut.D00838' => 'egut', 'Migut.D01092' => 'egut', 'Migut.J00072' => 'egut', 'Migut.L00087' => 'egut', 'Migut.M00893' => 'egut', 'MSTRG.12695' => 'ama', 'MSTRG.12697' => 'ama', 'MSTRG.15742' => 'ama', 'MSTRG.4694' => 'ama', 'MSTRG.5522' => 'ama', 'MSTRG.7501' => 'ama', 'Nitab4.5_0000233g0210' => 'nta', 'Nitab4.5_0000355g0150' => 'nta', 'Nitab4.5_0000821g0050' => 'nta', 'Nitab4.5_0001115g0130' => 'nta', 'Nitab4.5_0002009g0030' => 'nta', 'Nitab4.5_0004756g0070' => 'nta', 'Nitab4.5_0005094g0040' => 'nta', 'Nitab4.5_0005096g0010' => 'nta', 'Nitab4.5_0005460g0020' => 'nta', 'Nitab4.5_0006038g0020' => 'nta', 'Nn1g05224' => 'nnu', 'Nn1g06149' => 'nnu', 'Nn2g11073' => 'nnu', 'Nn2g13308' => 'nnu', 'Nn3g18586' => 'nnu', 'Nn3g20410' => 'nnu', 'Nn4g25143' => 'nnu', 'Oeu002119.1' => 'oeu', 'Oeu002588.1' => 'oeu', 'Oeu003233.1' => 'oeu', 'Oeu018792.1' => 'oeu', 'Oeu029905.1' => 'oeu', 'Oeu032479.2' => 'oeu', 'Oeu034525.1' => 'oeu', 'Oeu037525.1' => 'oeu', 'Oeu040098.1' => 'oeu', 'Oeu042462.1' => 'oeu', 'Oeu050031.1' => 'oeu', 'Oeu057978.2' => 'oeu', 'Os03g0171900' => 'osa', 'Os03g0338000' => 'osa', 'Os03g0643300' => 'osa', 'Os05g0129100' => 'osa', 'Os05g0475400' => 'osa', 'Os07g0461900' => 'osa', 'Peaxi162Scf00055g02414' => 'pax', 'Peaxi162Scf00108g01311' => 'pax', 'Peaxi162Scf00204g00216' => 'pax', 'Peaxi162Scf00317g00023' => 'pax', 'Peaxi162Scf00595g00111' => 'pax', 'Peaxi162Scf00744g00020' => 'pax', 'PGR004G0961' => 'pgr', 'PGR031G0489' => 'pgr', 'PGR083G1867' => 'pgr', 'PGR102G1900' => 'pgr', 'PGSC0003DMG400011868' => 'stu', 'PGSC0003DMG400012800' => 'stu', 'PGSC0003DMG400022742' => 'stu', 'PGSC0003DMG400029872' => 'stu', 'Phvul.002G180400' => 'pvu', 'Phvul.002G263500' => 'pvu', 'Phvul.006G002000' => 'pvu', 'Phvul.008G087600' => 'pvu', 'Phvul.010G078258' => 'pvu', 'Potri.005G082100' => 'ptr', 'Potri.005G095800' => 'ptr', 'Potri.006G106800' => 'ptr', 'Potri.007G080000' => 'ptr', 'Potri.007G085600' => 'ptr', 'Potri.011G082800' => 'ptr', 'Potri.016G132200' => 'ptr', 'Potri.017G053500' => 'ptr', 'Pp3c10_22930' => 'ppa', 'Pp3c14_3770' => 'ppa', 'Pp3c16_23960' => 'ppa', 'Pp3c21_11930' => 'ppa', 'Pp3s30_720' => 'ppa', 'PRCOL_00000023' => 'pco', 'PRCOL_00000992' => 'pco', 'PRCOL_00001506' => 'pco', 'PRCOL_00002709' => 'pco', 'PRCOL_00003424' => 'pco', 'Prupe.1G573800' => 'ppe', 'Prupe.3G094600' => 'ppe', 'Prupe.4G083300' => 'ppe', 'Prupe.4G137500' => 'ppe', 'Prupe.6G177100' => 'ppe', 'Prupe.6G288600' => 'ppe', 'Psat0s4940g0040' => 'psa', 'Psat0s4940g0080' => 'psa', 'Psat0s4940g0120' => 'psa', 'Psat3g121720' => 'psa', 'Psat5g152480' => 'psa', 'Psat7g051720' => 'psa', 'Psat7g081240' => 'psa', 'PSO017G3966' => 'pso', 'PSO017G5018' => 'pso', 'PSO063G5625' => 'pso', 'PSO170G1087' => 'pso', 'PSO170G5169' => 'pso', 'PSO447G0226' => 'pso', 'PSO675G8347' => 'pso', 'PSO782G1349' => 'pso', 'QL01p025628' => 'qlo', 'QL01p025657' => 'qlo', 'QL04p077165' => 'qlo', 'QL04p077169' => 'qlo', 'QL05p034039' => 'qlo', 'QL05p055819' => 'qlo', 'QL05p057206' => 'qlo', 'QL06p033286' => 'qlo', 'QL06p033321' => 'qlo', 'QL07p033248' => 'qlo', 'RcHm_v2.0_Chr2g0108711' => 'rch', 'RcHm_v2.0_Chr2g0115931' => 'rch', 'RcHm_v2.0_Chr2g0133691' => 'rch', 'RcHm_v2.0_Chr3g0461351' => 'rch', 'RcHm_v2.0_Chr5g0014471' => 'rch', 'RcHm_v2.0_Chr5g0026121' => 'rch', 'RcHm_v2.0_Chr6g0298301' => 'rch', 'Rhsim03G0186600' => 'rsi', 'Rhsim05G0228300' => 'rsi', 'Rhsim10G0154300' => 'rsi', 'Rhsim12G0188700' => 'rsi', 'Rhsim13G0115600' => 'rsi', 'RhsimUnG0122400' => 'rsi', 'Sabra04G0150200' => 'sbr', 'Sabra05G0079000' => 'sbr', 'Sabra06G0083100' => 'sbr', 'Sabra11G0065900' => 'sbr', 'Sabra17G0040700' => 'sbr', 'Sabra17G0045500' => 'sbr', 'SalBow3G0429' => 'sbo', 'SalBow3G0886' => 'sbo', 'SalBow5G0327' => 'sbo', 'SalBow5G1947' => 'sbo', 'SalBow6G0112' => 'sbo', 'SalBow6G3878' => 'sbo', 'SalBow8G2423' => 'sbo', 'Sc05g0006070' => 'sci', 'Sc05g0006080' => 'sci', 'Sc10g0006110' => 'sci', 'Sc16g0003030' => 'sci', 'Sc20g0006800' => 'sci', 'Sed0003877' => 'sed', 'Sed0010352' => 'sed', 'Sed0011135' => 'sed', 'Sed0014524' => 'sed', 'Sed0014917' => 'sed', 'Sed0016290' => 'sed', 'Sed0023373' => 'sed', 'Sed0026801' => 'sed', 'SEGI_06836' => 'sgi', 'SEGI_11338' => 'sgi', 'SEGI_29053' => 'sgi', 'SEGI_34235' => 'sgi', 'SGA_v2.0_scaffold117G32330' => 'sas', 'SGA_v2.0_scaffold199G41181' => 'sas', 'SGA_v2.0_scaffold1G00195' => 'sas', 'SGA_v2.0_scaffold47G17730' => 'sas', 'SGA_v2.0_scaffold85G26657' => 'sas', 'SHI11667' => 'shi', 'SHI11668' => 'shi', 'SHI11669' => 'shi', 'SHI11670' => 'shi', 'SHI12895' => 'shi', 'SHI12896' => 'shi', 'SHI19713' => 'shi', 'SMO016G0001' => 'smo', 'SMO016G0002' => 'smo', 'SMO119G0079' => 'smo', 'SMO134G0192' => 'smo', 'SMO274G0061' => 'smo', 'SMO348G0004' => 'smo', 'SMO353G0216' => 'smo', 'Solyc04g054310.3' => 'sly', 'Solyc08g048450.4' => 'sly', 'Solyc08g048460.2' => 'sly', 'Solyc08g080370.3' => 'sly', 'Solyc10g076250.2' => 'sly', 'Sopen04g023890' => 'spe', 'Sopen08g010730' => 'spe', 'Sopen08g028700' => 'spe', 'Sopen10g027870' => 'spe', 'Sp2g11040' => 'spa', 'Sp4g20720' => 'spa', 'Sp5g35170' => 'spa', 'Sp7g36230' => 'spa', 'TAR369G0133' => 'tar', 'TAR623G0252' => 'tar', 'TAR625G0636' => 'tar', 'TAR626G1128' => 'tar', 'TAR627G0038' => 'tar', 'TAR629G0022' => 'tar', 'THA.LOC104798396' => 'tha', 'THA.LOC104806625' => 'tha', 'THA.LOC104807714' => 'tha', 'THA.LOC104812451' => 'tha', 'THA.LOC104813578' => 'tha', 'THA.LOC104816171' => 'tha', 'Thecc.01G110000' => 'tca', 'Thecc.04G156500' => 'tca', 'Thecc.06G035900' => 'tca', 'Thecc.06G147800' => 'tca', 'Thhalv10000649m.g' => 'esa', 'Thhalv10000861m.g' => 'esa', 'Thhalv10016589m.g' => 'esa', 'Thhalv10018519m.g' => 'esa', 'Thhalv10025073m.g' => 'esa', 'TPR.G10164' => 'tpr', 'TPR.G10177' => 'tpr', 'TPR.G13303' => 'tpr', 'TPR.G16849' => 'tpr', 'TPR.G2177' => 'tpr', 'TPR.G2251' => 'tpr', 'TPR.G25693' => 'tpr', 'TPR.G30843' => 'tpr', 'TPR.G32122' => 'tpr', 'TPR.G35289' => 'tpr', 'TPR.G35293' => 'tpr', 'TPR.G39114' => 'tpr', 'TPR.G4310' => 'tpr', 'TWI09G1644' => 'twi', 'TWI12G0258' => 'twi', 'TWI53G1392' => 'twi', 'TWI74G0939' => 'twi', 'TWI74G1415' => 'twi', 'unitig_60.g25560' => 'ugi', 'unitig_60.g25561' => 'ugi', 'unitig_747.g21302' => 'ugi', 'unitig_88.g27734' => 'ugi', 'vmacro03342' => 'vma', 'vmacro12924' => 'vma', 'vmacro16867' => 'vma', 'vmacro20348' => 'vma', 'vmacro22383' => 'vma', 'VMungo0251G0373' => 'vmu', 'VMungo0251G3221' => 'vmu', 'VMungo0331G1897' => 'vmu', 'VMungo0647G2353' => 'vmu', 'VMungo0720G2303' => 'vmu', 'VMungo1383G2146' => 'vmu', 'Zm00001eb005550' => 'zma', 'Zm00001eb016230' => 'zma', 'Zm00001eb050460' => 'zma', 'Zm00001eb157510' => 'zma', 'Zm00001eb264960' => 'zma', 'Zm00001eb290370' => 'zma', 'Zm00001eb290460' => 'zma' ) $gf_id = 'HOM05D000826' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000826' ) $data_identifier = 'HOM05D000826' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 27, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 11, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 6, 'cre' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 5, 'pco' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 10, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 7, 'smo' => (int) 7, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 13, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb290460' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1